Single-Cell

Single-Cell & Systems Biology

Resolve cellular heterogeneity, map disease states, and find the biology bulk omics will never see.

What this service is

End-to-end single-cell and systems biology analytics — from QC and clustering through cell-type annotation, trajectory analysis, cell-cell communication, and integrative systems-level modelling.

When you need it

Single-Cell Data Analysis

Have scRNA-seq, snRNA-seq, scATAC-seq, or multi-omic single-cell data and need expert analysis.

Multi-Omics Integration

Integrating single-cell with bulk RNA-seq for cross-validation.

Disease State Characterisation

Need cell-state characterisation in disease (immune profiling, tumour microenvironment, neurodegeneration).

Rare Cell Population Discovery

Identifying rare cell populations or transient cell states.

Target & Biomarker Discovery

Using single-cell data for target identification or precision-medicine biomarker discovery.

Publication-Ready Single-Cell Work

Publishing single-cell work and need defensible methodology and reviewer-ready figures.

Our methodology

1
Data QC
Data QC (per-cell QC, doublet detection, mitochondrial/ribosomal filtering).
2
Pre-processing & Integration
Pre-processing and integration across samples/batches.
3
Clustering & Cell-Type Annotation
Clustering and cell-type annotation (manual + automated).
4
Differential Analysis
Differential analysis (pseudo-bulk DE, subpopulation signatures).
5
Trajectory & Pseudotime
Trajectory and pseudotime (Slingshot, Monocle3, scVelo).
6
Cell-Cell Communication
Cell-cell communication (CellChat, NicheNet, LIANA).
7
Multi-Omics Integration
Integration with bulk omics/perturbation data for translational endpoints.

Deliverables

Comprehensive analysis report (HTML + PDF). Annotated dataset (AnnData/Seurat). Publication-quality figures. Manuscript-ready methods section. Reproducible code repository. Optional GEO deposit and metadata curation.

Standards & tooling

Scanpy/AnnData Seurat Bioconductor (SingleCellExperiment) scVI/scVelo CellChat Containerised workflows

Outputs are designed for journal submission and peer-review readiness (publication is not guaranteed).

Typical turnaround: Typically 4–10 weeks.

Ready to move your manuscript forward?

Let's discuss your project timeline, journal strategy, and how our PhD-level writers can help.

Request a consultation

Tell us about your project and we'll reach out within 24 hours.

We'll respond within 24h. All inquiries are confidential.

Ready to advance your research?

From hypothesis to peer-review — let's scope a tailored plan for your lab.

NDA protected · You own 100% of deliverables · Milestone-based